Variant report

Variant	rs2148528
Chromosome Location	chr13:51703868-51703869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1340544	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535579	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9535580	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9535581	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9535582	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9563027	0.82[EUR][1000 genomes]
rs9563028	0.81[EUR][1000 genomes]
rs9568530	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51700400-51721200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:51700800-51711200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:51702400-51704200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr13:51702400-51708400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr13:51703000-51704000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:51703400-51704400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr13:51703600-51704000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr13:51703600-51704600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr13:51703600-51707000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr13:51703800-51704200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
11	chr13:51703800-51709000	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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