Variant report

Variant	rs9563028
Chromosome Location	chr13:51709017-51709018
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1340544	0.82[EUR][1000 genomes]
rs2148528	0.81[EUR][1000 genomes]
rs9535579	0.82[EUR][1000 genomes]
rs9535580	0.80[EUR][1000 genomes]
rs9535581	0.82[EUR][1000 genomes]
rs9535582	0.82[EUR][1000 genomes]
rs9563027	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9568530	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv976051	chr13:51707809-51721119	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51700400-51721200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:51700800-51711200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:51705400-51709400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr13:51706600-51711000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:51707800-51717400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:51708000-51709400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr13:51708000-51714400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:51708200-51715800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:51708200-51720400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr13:51708400-51709600	Enhancers	Liver	Liver
11	chr13:51708800-51709200	Bivalent Enhancer	HepG2	liver
12	chr13:51708800-51709400	Enhancers	Thymus	Thymus
13	chr13:51708800-51709600	Enhancers	Fetal Thymus	thymus
14	chr13:51709000-51709400	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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