Variant report

Variant	rs9535580
Chromosome Location	chr13:51702986-51702987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1340544	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2148528	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9535579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535581	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535582	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563027	0.81[EUR][1000 genomes]
rs9563028	0.80[EUR][1000 genomes]
rs9568530	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51699600-51703000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:51700200-51703400	Weak transcription	Spleen	Spleen
3	chr13:51700400-51703000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:51700400-51703400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:51700400-51703600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:51700400-51703800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:51700400-51721200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:51700800-51711200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:51702200-51703400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:51702400-51704200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr13:51702400-51708400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr13:51702800-51703200	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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