Variant report

Variant	rs2149232
Chromosome Location	chr9:16038446-16038447
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1328270	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1328272	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933906	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1857024	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs1887673	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41439648	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs56312242	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56774729	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57158144	1.00[AMR][1000 genomes]
rs58373606	1.00[AMR][1000 genomes]
rs58970083	1.00[AMR][1000 genomes]
rs58999162	1.00[AMR][1000 genomes]
rs59198717	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59352577	1.00[AMR][1000 genomes]
rs59574569	1.00[AMR][1000 genomes]
rs59655011	1.00[AMR][1000 genomes]
rs59882619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60249192	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60418791	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60641653	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60692567	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60846086	1.00[AMR][1000 genomes]
rs61481057	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411539	1.00[AMR][1000 genomes]
rs73411548	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411550	1.00[AMR][1000 genomes]
rs73411556	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411562	1.00[AMR][1000 genomes]
rs73411564	1.00[AMR][1000 genomes]
rs73411587	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413909	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413926	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413946	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413991	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417830	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424824	1.00[AMR][1000 genomes]
rs73424825	1.00[AMR][1000 genomes]
rs73424832	1.00[AMR][1000 genomes]
rs73424853	1.00[AMR][1000 genomes]
rs73645248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025555	chr9:16022186-16064158	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16023600-16040600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:16026200-16039200	Weak transcription	Adipose Nuclei	Adipose
3	chr9:16026400-16039200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:16030800-16050000	Weak transcription	Aorta	Aorta
5	chr9:16032200-16039200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:16033200-16039200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:16033400-16039200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:16033400-16039200	Weak transcription	Osteobl	bone
9	chr9:16034000-16043600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:16035600-16039200	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:16036200-16039000	Weak transcription	Fetal Kidney	kidney

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