Variant report

Variant	rs59198717
Chromosome Location	chr9:15946446-15946447
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs12001109	1.00[AMR][1000 genomes]
rs12002511	1.00[AMR][1000 genomes]
rs1328270	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1328272	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933906	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1857024	1.00[AMR][1000 genomes]
rs1887673	1.00[AMR][1000 genomes]
rs2149232	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41439648	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56312242	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56679179	1.00[AMR][1000 genomes]
rs56774729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57158144	1.00[AMR][1000 genomes]
rs57351686	1.00[AMR][1000 genomes]
rs57779097	1.00[AMR][1000 genomes]
rs58010776	1.00[AMR][1000 genomes]
rs58373606	1.00[AMR][1000 genomes]
rs58603418	1.00[AMR][1000 genomes]
rs58970083	1.00[AMR][1000 genomes]
rs58999162	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59106947	1.00[AMR][1000 genomes]
rs59352577	1.00[AMR][1000 genomes]
rs59574569	1.00[AMR][1000 genomes]
rs59655011	1.00[AMR][1000 genomes]
rs59703985	1.00[AMR][1000 genomes]
rs59860684	1.00[AMR][1000 genomes]
rs59882619	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60249192	1.00[AMR][1000 genomes]
rs60322090	1.00[AMR][1000 genomes]
rs60418791	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60581753	1.00[AMR][1000 genomes]
rs60641653	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60655538	1.00[AMR][1000 genomes]
rs60692567	1.00[AMR][1000 genomes]
rs60846086	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61481057	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411539	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411550	1.00[AMR][1000 genomes]
rs73411556	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411564	1.00[AMR][1000 genomes]
rs73411587	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413909	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413926	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413946	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413991	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417830	1.00[AMR][1000 genomes]
rs73418180	1.00[AMR][1000 genomes]
rs73420322	1.00[AMR][1000 genomes]
rs73420371	1.00[AMR][1000 genomes]
rs73420377	1.00[AMR][1000 genomes]
rs73420384	1.00[AMR][1000 genomes]
rs73420388	1.00[AMR][1000 genomes]
rs73422705	1.00[AMR][1000 genomes]
rs73422726	1.00[AMR][1000 genomes]
rs73422740	1.00[AMR][1000 genomes]
rs73422753	1.00[AMR][1000 genomes]
rs73424824	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424825	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424832	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424853	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644957	1.00[AMR][1000 genomes]
rs73644958	1.00[AMR][1000 genomes]
rs73644961	1.00[AMR][1000 genomes]
rs73645248	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646892	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3483970	chr9:15944147-15948125	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3483971	chr9:15944147-15948125	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15933200-15951400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:15936800-15946800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:15943800-15954800	Weak transcription	Fetal Lung	lung

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