Variant report

Variant	rs57779097
Chromosome Location	chr9:15817380-15817381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11998843	1.00[AMR][1000 genomes]
rs11999354	1.00[AMR][1000 genomes]
rs12001109	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12002030	1.00[AMR][1000 genomes]
rs12002511	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003371	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933587	1.00[AMR][1000 genomes]
rs1857024	1.00[AMR][1000 genomes]
rs35546678	1.00[AMR][1000 genomes]
rs41439648	1.00[AMR][1000 genomes]
rs55678381	1.00[AMR][1000 genomes]
rs56304941	1.00[AMR][1000 genomes]
rs56679179	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56754898	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818091	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57158144	1.00[AMR][1000 genomes]
rs57351686	1.00[AMR][1000 genomes]
rs57688272	1.00[AMR][1000 genomes]
rs58010776	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58373606	1.00[AMR][1000 genomes]
rs58603418	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58970083	1.00[AMR][1000 genomes]
rs58999162	1.00[AMR][1000 genomes]
rs59106947	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59198717	1.00[AMR][1000 genomes]
rs59228819	1.00[AMR][1000 genomes]
rs59352577	1.00[AMR][1000 genomes]
rs59574569	1.00[AMR][1000 genomes]
rs59655011	1.00[AMR][1000 genomes]
rs59703985	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59860684	1.00[AMR][1000 genomes]
rs60294159	1.00[AMR][1000 genomes]
rs60322090	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60418791	1.00[AMR][1000 genomes]
rs60581753	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60655538	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60846086	1.00[AMR][1000 genomes]
rs60911267	1.00[AMR][1000 genomes]
rs60997329	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61608504	1.00[AMR][1000 genomes]
rs73411539	1.00[AMR][1000 genomes]
rs73411548	1.00[AMR][1000 genomes]
rs73411550	1.00[AMR][1000 genomes]
rs73411556	1.00[AMR][1000 genomes]
rs73411562	1.00[AMR][1000 genomes]
rs73411564	1.00[AMR][1000 genomes]
rs73411587	1.00[AMR][1000 genomes]
rs73413909	1.00[AMR][1000 genomes]
rs73413926	1.00[AMR][1000 genomes]
rs73413946	1.00[AMR][1000 genomes]
rs73418180	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420322	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420371	1.00[AMR][1000 genomes]
rs73420377	1.00[AMR][1000 genomes]
rs73420384	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420388	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422705	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422726	1.00[AMR][1000 genomes]
rs73422740	1.00[AMR][1000 genomes]
rs73422753	1.00[AMR][1000 genomes]
rs73424824	1.00[AMR][1000 genomes]
rs73424825	1.00[AMR][1000 genomes]
rs73424832	1.00[AMR][1000 genomes]
rs73424853	1.00[AMR][1000 genomes]
rs73644686	1.00[AMR][1000 genomes]
rs73644689	1.00[AMR][1000 genomes]
rs73644690	1.00[AMR][1000 genomes]
rs73644691	1.00[AMR][1000 genomes]
rs73644692	1.00[AMR][1000 genomes]
rs73644693	1.00[AMR][1000 genomes]
rs73644695	1.00[AMR][1000 genomes]
rs73644942	1.00[AMR][1000 genomes]
rs73644943	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644945	1.00[AMR][1000 genomes]
rs73644946	1.00[AMR][1000 genomes]
rs73644957	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644958	1.00[AMR][1000 genomes]
rs73644961	1.00[AMR][1000 genomes]
rs7468160	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv6486	chr9:15805220-15837639	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv508536	chr9:15811619-15834267	Enhancers Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	esv3419707	chr9:15813752-15819250	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv3512843	chr9:15814102-15820400	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv3512844	chr9:15814102-15820400	Weak transcription ZNF genes & repeats Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3391279	chr9:15814377-15818325	Weak transcription ZNF genes & repeats Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv2554638	chr9:15814444-15822789	ZNF genes & repeats Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3388917	chr9:15814512-15822123	Weak transcription ZNF genes & repeats Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3359937	chr9:15814577-15819250	Active TSS Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3489094	chr9:15814602-15823000	ZNF genes & repeats Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
18	esv989500	chr9:15814800-15825052	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
19	esv3489095	chr9:15814898-15824101	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
20	nsv436605	chr9:15814917-15822062	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
21	esv5520	chr9:15815059-15822060	ZNF genes & repeats Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
22	esv3442067	chr9:15815091-15822055	Weak transcription ZNF genes & repeats Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
23	esv1987381	chr9:15815118-15822093	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
24	esv3430026	chr9:15815148-15822027	ZNF genes & repeats Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
25	esv3489096	chr9:15815162-15822009	Active TSS Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
26	esv3481997	chr9:15815175-15822045	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
27	nsv824862	chr9:15815192-15822312	ZNF genes & repeats Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
28	esv3489093	chr9:15815196-15821991	ZNF genes & repeats Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
29	esv3482000	chr9:15815216-15822007	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
30	esv3481999	chr9:15815230-15821979	ZNF genes & repeats Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
31	esv3481995	chr9:15815231-15822012	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
32	esv3341014	chr9:15815248-15821990	ZNF genes & repeats Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
33	nsv821345	chr9:15815285-15823367	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
34	nsv824863	chr9:15815285-15823367	Weak transcription ZNF genes & repeats Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
35	esv3481998	chr9:15815291-15821948	ZNF genes & repeats Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
36	esv3489098	chr9:15815305-15821940	ZNF genes & repeats Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
37	nsv499777	chr9:15815306-15821944	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
38	esv3482001	chr9:15815307-15821944	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
39	esv3489099	chr9:15815307-15821944	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
40	esv16959	chr9:15815327-15822312	ZNF genes & repeats Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
41	esv1797906	chr9:15815363-15818219	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
42	esv1799171	chr9:15815363-15818219	ZNF genes & repeats Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
43	esv1842183	chr9:15815363-15818219	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
44	esv1847826	chr9:15815363-15818219	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
45	esv1804026	chr9:15815363-15819419	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
46	esv1817381	chr9:15815363-15819419	ZNF genes & repeats Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
47	esv1820921	chr9:15815363-15819419	Active TSS Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
48	esv1822710	chr9:15815363-15819419	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
49	esv1836436	chr9:15815363-15819419	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
50	esv1836858	chr9:15815363-15819419	ZNF genes & repeats Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15814800-15831200	Weak transcription	Psoas Muscle	Psoas
2	chr9:15816400-15818400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:15817000-15817400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
4	chr9:15817200-15817600	ZNF genes & repeats	Thymus	Thymus

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