Variant report

Variant	rs57688272
Chromosome Location	chr9:15697153-15697154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11998843	1.00[AMR][1000 genomes]
rs11999354	1.00[AMR][1000 genomes]
rs11999403	1.00[AMR][1000 genomes]
rs12001109	1.00[AMR][1000 genomes]
rs12002030	1.00[AMR][1000 genomes]
rs12002511	1.00[AMR][1000 genomes]
rs12003098	1.00[AMR][1000 genomes]
rs12003371	1.00[AMR][1000 genomes]
rs16933373	1.00[AMR][1000 genomes]
rs16933376	1.00[AMR][1000 genomes]
rs16933587	1.00[AMR][1000 genomes]
rs35546678	1.00[AMR][1000 genomes]
rs55678381	1.00[AMR][1000 genomes]
rs56304941	1.00[AMR][1000 genomes]
rs56333848	1.00[AMR][1000 genomes]
rs56679179	1.00[AMR][1000 genomes]
rs56754898	1.00[AMR][1000 genomes]
rs56818091	1.00[AMR][1000 genomes]
rs56974853	1.00[AMR][1000 genomes]
rs57098037	1.00[AMR][1000 genomes]
rs57108331	1.00[AMR][1000 genomes]
rs57201285	1.00[AMR][1000 genomes]
rs57351686	1.00[AMR][1000 genomes]
rs57779097	1.00[AMR][1000 genomes]
rs58010776	1.00[AMR][1000 genomes]
rs58596549	1.00[AMR][1000 genomes]
rs58603418	1.00[AMR][1000 genomes]
rs58892201	1.00[AMR][1000 genomes]
rs59106947	1.00[AMR][1000 genomes]
rs59228819	1.00[AMR][1000 genomes]
rs59254174	1.00[AMR][1000 genomes]
rs59655011	1.00[AMR][1000 genomes]
rs59703985	1.00[AMR][1000 genomes]
rs59736306	1.00[AMR][1000 genomes]
rs59860684	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60294159	1.00[AMR][1000 genomes]
rs60322090	1.00[AMR][1000 genomes]
rs60581753	1.00[AMR][1000 genomes]
rs60655538	1.00[AMR][1000 genomes]
rs60911267	1.00[AMR][1000 genomes]
rs60918672	1.00[AMR][1000 genomes]
rs60997329	1.00[AMR][1000 genomes]
rs61608504	1.00[AMR][1000 genomes]
rs73418180	1.00[AMR][1000 genomes]
rs73420322	1.00[AMR][1000 genomes]
rs73420371	1.00[AMR][1000 genomes]
rs73420377	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420384	1.00[AMR][1000 genomes]
rs73420388	1.00[AMR][1000 genomes]
rs73422705	1.00[AMR][1000 genomes]
rs73422726	1.00[AMR][1000 genomes]
rs73422740	1.00[AMR][1000 genomes]
rs73422753	1.00[AMR][1000 genomes]
rs73644661	1.00[AMR][1000 genomes]
rs73644680	1.00[AMR][1000 genomes]
rs73644681	1.00[AMR][1000 genomes]
rs73644683	1.00[AMR][1000 genomes]
rs73644686	1.00[AMR][1000 genomes]
rs73644689	1.00[AMR][1000 genomes]
rs73644690	1.00[AMR][1000 genomes]
rs73644691	1.00[AMR][1000 genomes]
rs73644692	1.00[AMR][1000 genomes]
rs73644693	1.00[AMR][1000 genomes]
rs73644695	1.00[AMR][1000 genomes]
rs73644942	1.00[AMR][1000 genomes]
rs73644943	1.00[AMR][1000 genomes]
rs73644945	1.00[AMR][1000 genomes]
rs73644946	1.00[AMR][1000 genomes]
rs73644957	1.00[AMR][1000 genomes]
rs73644958	1.00[AMR][1000 genomes]
rs73644961	1.00[AMR][1000 genomes]
rs7468160	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15669000-15720800	Weak transcription	Gastric	stomach
2	chr9:15675000-15699000	Weak transcription	Left Ventricle	heart
3	chr9:15676600-15725000	Weak transcription	Pancreas	Pancrea
4	chr9:15679800-15746800	Weak transcription	Ovary	ovary
5	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
6	chr9:15690400-15721800	Weak transcription	Fetal Lung	lung
7	chr9:15691400-15699200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:15691800-15717000	Weak transcription	Thymus	Thymus
9	chr9:15693800-15703600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:15694000-15700800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:15694200-15697400	Weak transcription	Brain Anterior Caudate	brain
12	chr9:15694200-15705600	Weak transcription	Adipose Nuclei	Adipose
13	chr9:15694600-15700200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr9:15694800-15700200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:15695000-15697600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:15695600-15700000	Weak transcription	Lung	lung
17	chr9:15695800-15697400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:15695800-15698000	Weak transcription	Fetal Thymus	thymus
19	chr9:15695800-15699000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:15696600-15698200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:15696800-15697200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr9:15696800-15697400	Flanking Active TSS	Hela-S3	cervix
23	chr9:15696800-15697600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:15696800-15698200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:15696800-15698200	Enhancers	NHLF	lung
26	chr9:15696800-15698400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:15697000-15697200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:15697000-15697400	Strong transcription	Primary hematopoietic stem cells	blood
29	chr9:15697000-15697400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:15697000-15697400	Enhancers	Esophagus	oesophagus
31	chr9:15697000-15697400	Enhancers	A549	lung
32	chr9:15697000-15697600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:15697000-15697600	Enhancers	NHDF-Ad	bronchial
34	chr9:15697000-15697800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:15697000-15697800	Enhancers	HMEC	breast
36	chr9:15697000-15698000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:15697000-15698000	Enhancers	HUVEC	blood vessel
38	chr9:15697000-15698000	Enhancers	Osteobl	bone
39	chr9:15697000-15698200	Enhancers	NH-A	brain
40	chr9:15697000-15698200	Enhancers	NHEK	skin
41	chr9:15697000-15698400	Enhancers	HSMM	muscle

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