Variant report

Variant	rs56754898
Chromosome Location	chr9:15765700-15765701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs11998843	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11999354	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11999403	1.00[AMR][1000 genomes]
rs12001109	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12002030	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12002511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933587	1.00[AMR][1000 genomes]
rs1857024	1.00[AMR][1000 genomes]
rs35546678	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41439648	1.00[AMR][1000 genomes]
rs55678381	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56304941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56323052	0.91[AFR][1000 genomes]
rs56333848	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56679179	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818091	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56974853	1.00[AMR][1000 genomes]
rs57108331	1.00[AMR][1000 genomes]
rs57158144	1.00[AMR][1000 genomes]
rs57201285	1.00[AMR][1000 genomes]
rs57351686	1.00[AMR][1000 genomes]
rs57688272	1.00[AMR][1000 genomes]
rs57779097	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58010776	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58373606	1.00[AMR][1000 genomes]
rs58603418	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58892201	1.00[AMR][1000 genomes]
rs58970083	1.00[AMR][1000 genomes]
rs58999162	1.00[AMR][1000 genomes]
rs59106947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59228819	1.00[AMR][1000 genomes]
rs59254174	1.00[AMR][1000 genomes]
rs59574569	1.00[AMR][1000 genomes]
rs59655011	1.00[AMR][1000 genomes]
rs59703985	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59736306	1.00[AMR][1000 genomes]
rs59860684	1.00[AMR][1000 genomes]
rs60294159	1.00[AMR][1000 genomes]
rs60322090	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60581753	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60651191	0.91[AFR][1000 genomes]
rs60655538	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60846086	1.00[AMR][1000 genomes]
rs60911267	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60940884	0.91[AFR][1000 genomes]
rs60997329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61608504	1.00[AMR][1000 genomes]
rs7033545	0.82[AFR][1000 genomes]
rs73418180	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420322	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420371	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420377	1.00[AMR][1000 genomes]
rs73420384	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420388	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422705	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422726	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422740	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422753	1.00[AMR][1000 genomes]
rs73424824	1.00[AMR][1000 genomes]
rs73424825	1.00[AMR][1000 genomes]
rs73424832	1.00[AMR][1000 genomes]
rs73424853	1.00[AMR][1000 genomes]
rs73644680	1.00[AMR][1000 genomes]
rs73644681	1.00[AMR][1000 genomes]
rs73644683	1.00[AMR][1000 genomes]
rs73644686	1.00[AMR][1000 genomes]
rs73644689	1.00[AMR][1000 genomes]
rs73644690	1.00[AMR][1000 genomes]
rs73644691	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644692	1.00[AMR][1000 genomes]
rs73644693	1.00[AMR][1000 genomes]
rs73644695	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644696	0.91[AFR][1000 genomes]
rs73644697	0.91[AFR][1000 genomes]
rs73644942	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644945	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644946	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644957	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644958	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644961	1.00[AMR][1000 genomes]
rs7468160	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15742600-15769600	Weak transcription	Psoas Muscle	Psoas
2	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15759200-15784400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:15763600-15774400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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