Variant report

Variant	rs56679179
Chromosome Location	chr9:15850960-15850961
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11998843	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11999354	1.00[AMR][1000 genomes]
rs12001109	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12002511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003371	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1328270	1.00[AMR][1000 genomes]
rs1328272	1.00[AMR][1000 genomes]
rs16933587	1.00[AMR][1000 genomes]
rs16933906	1.00[AMR][1000 genomes]
rs1857024	1.00[AMR][1000 genomes]
rs41439648	1.00[AMR][1000 genomes]
rs55678381	1.00[AMR][1000 genomes]
rs56312242	1.00[AMR][1000 genomes]
rs56754898	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56774729	1.00[AMR][1000 genomes]
rs56818091	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57158144	1.00[AMR][1000 genomes]
rs57351686	1.00[AMR][1000 genomes]
rs57688272	1.00[AMR][1000 genomes]
rs57779097	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58010776	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58373606	1.00[AMR][1000 genomes]
rs58603418	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58970083	1.00[AMR][1000 genomes]
rs58999162	1.00[AMR][1000 genomes]
rs59106947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59198717	1.00[AMR][1000 genomes]
rs59352577	1.00[AMR][1000 genomes]
rs59574569	1.00[AMR][1000 genomes]
rs59655011	1.00[AMR][1000 genomes]
rs59703985	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59860684	1.00[AMR][1000 genomes]
rs60294159	1.00[AMR][1000 genomes]
rs60322090	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60418791	1.00[AMR][1000 genomes]
rs60581753	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60655538	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60846086	1.00[AMR][1000 genomes]
rs60911267	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60997329	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61481057	1.00[AMR][1000 genomes]
rs73411539	1.00[AMR][1000 genomes]
rs73411548	1.00[AMR][1000 genomes]
rs73411550	1.00[AMR][1000 genomes]
rs73411556	1.00[AMR][1000 genomes]
rs73411562	1.00[AMR][1000 genomes]
rs73411564	1.00[AMR][1000 genomes]
rs73411587	1.00[AMR][1000 genomes]
rs73413909	1.00[AMR][1000 genomes]
rs73413926	1.00[AMR][1000 genomes]
rs73413946	1.00[AMR][1000 genomes]
rs73413991	1.00[AMR][1000 genomes]
rs73418180	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420322	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420377	1.00[AMR][1000 genomes]
rs73420384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422726	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422753	1.00[AMR][1000 genomes]
rs73424824	1.00[AMR][1000 genomes]
rs73424825	1.00[AMR][1000 genomes]
rs73424832	1.00[AMR][1000 genomes]
rs73424853	1.00[AMR][1000 genomes]
rs73644689	1.00[AMR][1000 genomes]
rs73644690	1.00[AMR][1000 genomes]
rs73644691	1.00[AMR][1000 genomes]
rs73644692	1.00[AMR][1000 genomes]
rs73644693	1.00[AMR][1000 genomes]
rs73644695	1.00[AMR][1000 genomes]
rs73644942	1.00[AMR][1000 genomes]
rs73644943	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644945	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644946	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644958	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73644961	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613666	chr9:15823667-15875162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv613667	chr9:15823667-15876507	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016226	chr9:15841107-15875321	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1015435	chr9:15841107-15880385	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1032081	chr9:15845902-15878115	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1027790	chr9:15845902-15878841	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15830200-15857200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15845000-15858800	Weak transcription	Thymus	Thymus
3	chr9:15847200-15857600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:15849000-15873800	Weak transcription	Fetal Lung	lung
5	chr9:15850000-15851000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:15850000-15852800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:15850400-15851000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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