Variant report

Variant	rs2151661
Chromosome Location	chr9:13489964-13489965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13488175..13490333-chr9:13491213..13494112,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10756476	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10961085	0.97[ASN][1000 genomes]
rs10961086	0.97[ASN][1000 genomes]
rs1333994	0.85[JPT][hapmap]
rs1889297	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2094509	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28402800	0.94[ASN][1000 genomes]
rs2890969	0.92[ASN][1000 genomes]
rs7856695	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1016178	chr9:13486352-13502124	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2761501	chr9:13486364-13504924	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13477800-13491800	Weak transcription	Right Ventricle	heart
2	chr9:13481000-13490000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr9:13481000-13491800	Weak transcription	Pancreas	Pancrea
4	chr9:13484600-13491400	Weak transcription	Aorta	Aorta
5	chr9:13484600-13491800	Weak transcription	Left Ventricle	heart
6	chr9:13484600-13493600	Weak transcription	Right Atrium	heart
7	chr9:13485200-13492000	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:13485600-13490600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:13486200-13490200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:13487200-13490000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:13488200-13490000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:13488200-13490200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr9:13488200-13495000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr9:13488800-13491000	Weak transcription	HMEC	breast
15	chr9:13488800-13491400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:13489000-13491800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:13489600-13491200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:13489800-13490400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr9:13489800-13491200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr9:13489800-13491800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr9:13489800-13495000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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