Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:13488175..13490333-chr9:13491213..13494112,2	MCF-7	breast:
2	chr9:13478234..13480569-chr9:13486297..13488597,2	MCF-7	breast:
3	chr9:13486936..13489279-chr9:13509776..13512119,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10121700	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10961068	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10961086	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961093	0.91[EUR][1000 genomes]
rs1113190	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12237191	0.83[EUR][1000 genomes]
rs12238169	0.84[EUR][1000 genomes]
rs1333993	0.94[EUR][1000 genomes]
rs1333994	0.90[EUR][1000 genomes]
rs1556578	0.82[EUR][1000 genomes]
rs17462133	0.97[EUR][1000 genomes]
rs17521458	0.93[EUR][1000 genomes]
rs17521660	0.97[EUR][1000 genomes]
rs1831906	0.83[EUR][1000 genomes]
rs2151660	0.90[EUR][1000 genomes]
rs2151661	0.97[ASN][1000 genomes]
rs2184231	0.90[EUR][1000 genomes]
rs28402800	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2890968	0.90[EUR][1000 genomes]
rs2890969	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34561278	0.90[EUR][1000 genomes]
rs67074307	0.91[EUR][1000 genomes]
rs7856695	0.98[ASN][1000 genomes]
rs988017	0.83[EUR][1000 genomes]
rs988018	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1016178	chr9:13486352-13502124	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2761501	chr9:13486364-13504924	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13477800-13491800	Weak transcription	Right Ventricle	heart
2	chr9:13481000-13490000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr9:13481000-13491800	Weak transcription	Pancreas	Pancrea
4	chr9:13484600-13491400	Weak transcription	Aorta	Aorta
5	chr9:13484600-13491800	Weak transcription	Left Ventricle	heart
6	chr9:13484600-13493600	Weak transcription	Right Atrium	heart
7	chr9:13485200-13492000	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:13485600-13489000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:13485600-13490600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:13486200-13490200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:13487200-13488800	Enhancers	HMEC	breast
12	chr9:13487200-13489000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:13487200-13490000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:13487600-13489800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:13487800-13489200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:13488000-13488800	Enhancers	Fetal Heart	heart
17	chr9:13488200-13490000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:13488200-13490200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr9:13488200-13495000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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