Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10961068	0.97[EUR][1000 genomes]
rs10961085	0.93[EUR][1000 genomes]
rs10961086	0.92[EUR][1000 genomes]
rs10961093	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1113190	0.91[EUR][1000 genomes]
rs12237191	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12238169	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1333993	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1333994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs17462133	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17521660	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2151660	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2184231	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28402800	0.91[EUR][1000 genomes]
rs2890968	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2890969	0.85[EUR][1000 genomes]
rs34561278	0.85[EUR][1000 genomes]
rs67074307	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs988017	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs988018	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13476200-13487200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13477800-13491800	Weak transcription	Right Ventricle	heart
3	chr9:13479200-13483800	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:13479200-13484400	Weak transcription	HSMMtube	muscle
5	chr9:13479400-13483800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:13479400-13484600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:13481000-13483600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr9:13481000-13484000	Weak transcription	Psoas Muscle	Psoas
9	chr9:13481000-13490000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:13481000-13491800	Weak transcription	Pancreas	Pancrea
11	chr9:13481200-13483600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:13481200-13484400	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:13481200-13485000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:13481200-13485000	Weak transcription	HMEC	breast
15	chr9:13481400-13485200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:13483000-13484000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:13483000-13487800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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