Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10961085	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10961086	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10961093	0.89[EUR][1000 genomes]
rs1113190	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12237191	0.91[EUR][1000 genomes]
rs12238169	0.91[EUR][1000 genomes]
rs1333993	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1333994	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs17462133	0.90[EUR][1000 genomes]
rs17521458	0.97[EUR][1000 genomes]
rs17521660	0.90[EUR][1000 genomes]
rs1831906	0.80[EUR][1000 genomes]
rs2151660	0.83[EUR][1000 genomes]
rs2184231	0.83[EUR][1000 genomes]
rs28402800	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2890968	0.83[EUR][1000 genomes]
rs2890969	0.84[EUR][1000 genomes]
rs34561278	0.83[EUR][1000 genomes]
rs67074307	0.89[EUR][1000 genomes]
rs988017	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988018	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13456000-13467400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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