Variant report

Variant	rs1113190
Chromosome Location	chr9:13477808-13477809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10961068	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10961085	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10961086	0.84[EUR][1000 genomes]
rs12237191	0.97[EUR][1000 genomes]
rs12238169	0.97[EUR][1000 genomes]
rs1333993	0.90[EUR][1000 genomes]
rs1333994	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17462133	0.83[EUR][1000 genomes]
rs17521458	0.91[EUR][1000 genomes]
rs17521660	0.83[EUR][1000 genomes]
rs1831906	0.87[EUR][1000 genomes]
rs2151660	0.92[EUR][1000 genomes]
rs2184231	0.92[EUR][1000 genomes]
rs28402800	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2890968	0.92[EUR][1000 genomes]
rs2890969	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34561278	0.92[EUR][1000 genomes]
rs988017	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs988018	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13476200-13487200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13476800-13479400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:13477000-13478000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:13477200-13478000	Enhancers	Fetal Muscle Trunk	muscle
5	chr9:13477200-13478600	Enhancers	Fetal Stomach	stomach
6	chr9:13477400-13478000	Enhancers	Fetal Muscle Leg	muscle
7	chr9:13477600-13478000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:13477600-13478000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr9:13477600-13478600	Enhancers	Stomach Smooth Muscle	stomach
10	chr9:13477600-13479200	Enhancers	HSMM	muscle
11	chr9:13477600-13479400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:13477800-13478000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:13477800-13479000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:13477800-13479000	Enhancers	Fetal Lung	lung
15	chr9:13477800-13479600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:13477800-13480600	Weak transcription	Pancreas	Pancrea
17	chr9:13477800-13491800	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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