Variant report

Variant	rs34561278
Chromosome Location	chr9:13491436-13491437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13488175..13490333-chr9:13491213..13494112,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10961068	0.83[EUR][1000 genomes]
rs10961085	0.90[EUR][1000 genomes]
rs10961086	0.92[EUR][1000 genomes]
rs10961093	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1113190	0.92[EUR][1000 genomes]
rs12237191	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12238169	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1333993	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1333994	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1333996	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17462133	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17521458	0.85[EUR][1000 genomes]
rs17521660	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1831906	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2151660	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184231	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28402800	0.90[EUR][1000 genomes]
rs2890968	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2890969	0.98[EUR][1000 genomes]
rs67074307	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs988017	0.91[EUR][1000 genomes]
rs988018	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1016178	chr9:13486352-13502124	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2761501	chr9:13486364-13504924	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13477800-13491800	Weak transcription	Right Ventricle	heart
2	chr9:13481000-13491800	Weak transcription	Pancreas	Pancrea
3	chr9:13484600-13491800	Weak transcription	Left Ventricle	heart
4	chr9:13484600-13493600	Weak transcription	Right Atrium	heart
5	chr9:13485200-13492000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:13488200-13495000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:13489000-13491800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:13489800-13491800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:13489800-13495000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:13490000-13491800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:13490000-13494000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:13490200-13493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:13490200-13494000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:13490400-13491600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:13490600-13492200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:13491000-13492000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr9:13491000-13492600	Enhancers	HMEC	breast
18	chr9:13491000-13492800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:13491200-13491600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr9:13491200-13492600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr9:13491400-13491600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:13491400-13491600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
23	chr9:13491400-13491800	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr9:13491400-13492000	Enhancers	Aorta	Aorta
25	chr9:13491400-13492400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:13491400-13493000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:13491400-13493400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr9:13491400-13494000	Enhancers	H1 Cell Line	embryonic stem cell

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