Variant report

Variant	rs1333996
Chromosome Location	chr9:13504924-13504925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10961093	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12237191	0.83[AMR][1000 genomes]
rs12238169	0.84[AMR][1000 genomes]
rs1333994	0.92[CEU][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17462133	0.88[ASN][1000 genomes]
rs17521660	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1831906	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151660	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2184231	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2890968	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34561278	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs67074307	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2761501	chr9:13486364-13504924	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13493000-13526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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