Variant report
| Variant | rs1831906 |
|---|---|
| Chromosome Location | chr9:13505690-13505691 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10961068 | 0.80[EUR][1000 genomes] |
| rs10961085 | 0.83[EUR][1000 genomes] |
| rs10961086 | 0.85[EUR][1000 genomes] |
| rs10961093 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1113190 | 0.87[EUR][1000 genomes] |
| rs12237191 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12238169 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1333993 | 0.81[EUR][1000 genomes] |
| rs1333994 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1333996 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17462133 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17521660 | 0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2151660 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2184231 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs28402800 | 0.85[EUR][1000 genomes] |
| rs2890968 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2890969 | 0.91[EUR][1000 genomes] |
| rs34561278 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs67074307 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs988017 | 0.88[EUR][1000 genomes] |
| rs988018 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831515 | chr9:13333205-13517308 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13493000-13526800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
