Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13488175..13490333-chr9:13491213..13494112,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10121700	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10961068	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10961085	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10961086	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10961093	0.93[EUR][1000 genomes]
rs1113190	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12237191	0.82[EUR][1000 genomes]
rs12238169	0.81[EUR][1000 genomes]
rs1333993	0.91[EUR][1000 genomes]
rs1333994	0.88[EUR][1000 genomes]
rs1556578	0.84[EUR][1000 genomes]
rs17462133	0.99[EUR][1000 genomes]
rs17521458	0.91[EUR][1000 genomes]
rs17521660	0.99[EUR][1000 genomes]
rs1831906	0.85[EUR][1000 genomes]
rs2151660	0.90[EUR][1000 genomes]
rs2151661	0.94[ASN][1000 genomes]
rs2184231	0.90[EUR][1000 genomes]
rs2890968	0.90[EUR][1000 genomes]
rs2890969	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34561278	0.90[EUR][1000 genomes]
rs67074307	0.93[EUR][1000 genomes]
rs7856695	0.95[ASN][1000 genomes]
rs988017	0.82[EUR][1000 genomes]
rs988018	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1016178	chr9:13486352-13502124	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2761501	chr9:13486364-13504924	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13484600-13493600	Weak transcription	Right Atrium	heart
2	chr9:13488200-13495000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:13489800-13495000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr9:13490000-13494000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:13490200-13494000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:13491400-13493400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:13491400-13494000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:13491600-13494000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr9:13492000-13493400	Weak transcription	Aorta	Aorta
10	chr9:13492200-13493400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:13492400-13494400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:13492600-13494000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:13492600-13494600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr9:13492600-13495200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:13492800-13495000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:13493000-13526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:13493200-13493800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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