Variant report

Variant	rs2155443
Chromosome Location	chr11:100798537-100798538
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs471180	0.81[AFR][1000 genomes]
rs485546	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs512176	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs514957	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs515868	0.88[AFR][1000 genomes]
rs520403	0.81[AFR][1000 genomes]
rs525940	0.81[AFR][1000 genomes]
rs531078	0.85[EUR][1000 genomes]
rs539648	0.81[EUR][1000 genomes]
rs545183	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs546052	0.81[AFR][1000 genomes]
rs576472	0.84[YRI][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs585183	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs607392	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs608920	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs613667	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs626529	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs641341	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs647256	0.81[EUR][1000 genomes]
rs649512	0.85[EUR][1000 genomes]
rs657945	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs662530	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs668513	0.80[YRI][hapmap];0.81[EUR][1000 genomes]
rs672160	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs673183	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7938783	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:100773800-100809800	Weak transcription	Left Ventricle	heart
3	chr11:100774800-100812800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:100784000-100808800	Weak transcription	Primary B cells from cord blood	blood
5	chr11:100785400-100838400	Weak transcription	Fetal Intestine Small	intestine
6	chr11:100786800-100806800	Weak transcription	Placenta	Placenta
7	chr11:100790000-100803200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:100790200-100812600	Weak transcription	Stomach Mucosa	stomach
9	chr11:100790400-100806600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:100793400-100807000	Weak transcription	Liver	Liver
11	chr11:100794200-100799200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:100794200-100803000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:100794200-100807000	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:100794400-100800000	Weak transcription	HSMMtube	muscle
15	chr11:100794400-100812800	Weak transcription	Fetal Stomach	stomach
16	chr11:100794800-100799400	Weak transcription	HSMM	muscle
17	chr11:100794800-100800000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:100794800-100800200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:100795000-100800000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:100795600-100807400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:100796400-100799000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:100797000-100798600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:100797000-100798600	Weak transcription	NHEK	skin
24	chr11:100797000-100798600	Weak transcription	Osteobl	bone
25	chr11:100797000-100799200	Weak transcription	NHDF-Ad	bronchial
26	chr11:100797000-100800000	Weak transcription	Hela-S3	cervix
27	chr11:100797200-100799000	Weak transcription	HMEC	breast
28	chr11:100797200-100799800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:100797200-100800000	Weak transcription	A549	lung
30	chr11:100797400-100799200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:100797400-100800000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:100797600-100799600	Weak transcription	GM12878-XiMat	blood
33	chr11:100797600-100811800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:100797800-100798800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:100798000-100798600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:100798200-100798600	Enhancers	Fetal Heart	heart
37	chr11:100798200-100798800	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr11:100798200-100798800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:100798200-100799000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:100798200-100800400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:100798400-100798600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr11:100798400-100798600	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr11:100798400-100798600	Enhancers	Brain Anterior Caudate	brain
44	chr11:100798400-100798600	Enhancers	Brain Hippocampus Middle	brain
45	chr11:100798400-100798600	Enhancers	Fetal Lung	lung
46	chr11:100798400-100798600	Enhancers	Gastric	stomach
47	chr11:100798400-100798600	Enhancers	Ovary	ovary
48	chr11:100798400-100798800	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr11:100798400-100798800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr11:100798400-100798800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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