Variant report

Variant	rs585183
Chromosome Location	chr11:100786247-100786248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10791434	0.80[AFR][1000 genomes]
rs10791435	0.80[AFR][1000 genomes]
rs10791437	0.80[AFR][1000 genomes]
rs10791438	0.80[AFR][1000 genomes]
rs10895031	0.80[AFR][1000 genomes]
rs11224535	0.80[AFR][1000 genomes]
rs1941372	0.80[AFR][1000 genomes]
rs2155442	0.80[AFR][1000 genomes]
rs2155443	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2510624	0.80[AFR][1000 genomes]
rs3017866	0.80[AFR][1000 genomes]
rs4753987	0.80[AFR][1000 genomes]
rs477567	0.80[AFR][1000 genomes]
rs480080	0.80[AFR][1000 genomes]
rs481991	0.80[AFR][1000 genomes]
rs483789	0.80[AFR][1000 genomes]
rs485546	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs493079	0.80[AFR][1000 genomes]
rs501797	0.80[AFR][1000 genomes]
rs503455	0.80[AFR][1000 genomes]
rs506242	0.80[AFR][1000 genomes]
rs508850	0.80[AFR][1000 genomes]
rs508950	0.80[AFR][1000 genomes]
rs509013	0.80[AFR][1000 genomes]
rs509166	0.80[AFR][1000 genomes]
rs509676	0.80[AFR][1000 genomes]
rs512176	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs513057	0.80[AFR][1000 genomes]
rs514101	0.80[AFR][1000 genomes]
rs514403	0.80[AFR][1000 genomes]
rs514957	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs518675	0.80[AFR][1000 genomes]
rs519235	0.80[AFR][1000 genomes]
rs519594	0.80[AFR][1000 genomes]
rs520539	0.80[AFR][1000 genomes]
rs522337	0.80[AFR][1000 genomes]
rs524416	0.80[AFR][1000 genomes]
rs525129	0.80[AFR][1000 genomes]
rs527689	0.81[EUR][1000 genomes]
rs531078	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs532783	0.80[AFR][1000 genomes]
rs534623	0.80[AFR][1000 genomes]
rs535518	0.80[AFR][1000 genomes]
rs538158	0.80[AFR][1000 genomes]
rs539204	0.80[AFR][1000 genomes]
rs539648	0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs540961	0.80[AFR][1000 genomes]
rs541056	0.80[AFR][1000 genomes]
rs544257	0.86[AFR][1000 genomes]
rs544388	0.80[AFR][1000 genomes]
rs545183	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs551502	0.80[AFR][1000 genomes]
rs562891	0.80[AFR][1000 genomes]
rs571904	0.80[AFR][1000 genomes]
rs572838	0.80[AFR][1000 genomes]
rs575448	0.80[AFR][1000 genomes]
rs578102	0.80[AFR][1000 genomes]
rs580773	0.80[AFR][1000 genomes]
rs583415	0.82[EUR][1000 genomes]
rs594200	0.80[AFR][1000 genomes]
rs595761	0.80[AFR][1000 genomes]
rs607392	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs608920	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs613667	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs616164	0.80[AFR][1000 genomes]
rs617898	0.80[AFR][1000 genomes]
rs618155	0.80[AFR][1000 genomes]
rs618907	0.80[AFR][1000 genomes]
rs619066	0.80[AFR][1000 genomes]
rs620790	0.80[AFR][1000 genomes]
rs623072	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs629442	0.86[AFR][1000 genomes]
rs629677	0.86[AFR][1000 genomes]
rs632725	0.80[AFR][1000 genomes]
rs633967	0.80[AFR][1000 genomes]
rs641341	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs647256	0.81[EUR][1000 genomes]
rs649369	0.80[AFR][1000 genomes]
rs649394	0.80[AFR][1000 genomes]
rs649512	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs657945	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs662173	0.80[AFR][1000 genomes]
rs662530	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs668513	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs672160	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs673183	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs676976	0.80[AFR][1000 genomes]
rs678775	0.80[AFR][1000 genomes]
rs693760	0.80[AFR][1000 genomes]
rs7933457	0.80[AFR][1000 genomes]
rs7938783	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:100758800-100789400	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:100761600-100788800	Weak transcription	Fetal Heart	heart
6	chr11:100770400-100789800	Weak transcription	Fetal Stomach	stomach
7	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:100773800-100789600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:100773800-100789800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:100773800-100809800	Weak transcription	Left Ventricle	heart
11	chr11:100774800-100812800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:100776000-100794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:100776800-100789600	Weak transcription	Gastric	stomach
14	chr11:100777400-100794200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:100779200-100789400	Weak transcription	NH-A	brain
16	chr11:100779800-100790000	Weak transcription	Psoas Muscle	Psoas
17	chr11:100779800-100794200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:100780400-100792600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:100782000-100789600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:100783000-100790000	Weak transcription	Ovary	ovary
21	chr11:100783200-100788800	Weak transcription	Fetal Kidney	kidney
22	chr11:100783600-100789600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:100783800-100789800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:100784000-100789800	Weak transcription	Small Intestine	intestine
25	chr11:100784000-100808800	Weak transcription	Primary B cells from cord blood	blood
26	chr11:100785200-100787000	Strong transcription	Liver	Liver
27	chr11:100785200-100789800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:100785400-100838400	Weak transcription	Fetal Intestine Small	intestine
29	chr11:100785600-100789400	Weak transcription	Fetal Lung	lung
30	chr11:100785600-100789800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:100785600-100789800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:100786200-100786800	Strong transcription	Placenta	Placenta
33	chr11:100786200-100794000	Weak transcription	HSMMtube	muscle

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