Variant report

Variant	rs672160
Chromosome Location	chr11:100773755-100773756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2155443	1.00[CEU][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs485546	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs512176	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs514957	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs531078	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs539648	0.90[AFR][1000 genomes]
rs545183	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs585183	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs607392	0.89[EUR][1000 genomes]
rs608920	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs613667	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs623072	0.92[AFR][1000 genomes]
rs641341	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs649512	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs652017	0.86[YRI][hapmap]
rs657945	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs662530	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs668513	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs673183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7938783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:100758800-100789400	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:100761600-100777400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:100761600-100788800	Weak transcription	Fetal Heart	heart
7	chr11:100762800-100779000	Weak transcription	NH-A	brain
8	chr11:100770400-100789800	Weak transcription	Fetal Stomach	stomach
9	chr11:100771200-100784600	Weak transcription	Fetal Intestine Small	intestine
10	chr11:100771800-100774600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:100771800-100774800	Weak transcription	Spleen	Spleen
12	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:100772400-100774800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:100772400-100776400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:100773000-100774400	Enhancers	Liver	Liver
16	chr11:100773400-100773800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:100773400-100773800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:100773400-100773800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:100773400-100773800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:100773400-100773800	Enhancers	Left Ventricle	heart
21	chr11:100773400-100773800	Enhancers	Lung	lung
22	chr11:100773400-100773800	Enhancers	Right Ventricle	heart
23	chr11:100773400-100774000	Enhancers	Adipose Nuclei	Adipose
24	chr11:100773400-100774000	Enhancers	Gastric	stomach

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