Variant report

Variant	rs623072
Chromosome Location	chr11:100778095-100778096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 192 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:190)

rs_ID	r²[population]
rs10501968	0.90[ASN][1000 genomes]
rs10791431	0.97[ASN][1000 genomes]
rs10791434	0.80[AFR][1000 genomes]
rs10791435	0.80[AFR][1000 genomes]
rs10791437	0.80[AFR][1000 genomes]
rs10791438	0.80[AFR][1000 genomes]
rs10895031	0.80[AFR][1000 genomes]
rs11224507	0.93[ASN][1000 genomes]
rs11224508	0.90[ASN][1000 genomes]
rs11224509	0.94[ASN][1000 genomes]
rs11224526	0.91[ASN][1000 genomes]
rs11224530	0.91[ASN][1000 genomes]
rs11224535	0.80[AFR][1000 genomes]
rs1145434	0.96[ASN][1000 genomes]
rs11534487	0.92[ASN][1000 genomes]
rs12416898	0.95[ASN][1000 genomes]
rs12417055	0.97[ASN][1000 genomes]
rs12417065	0.97[ASN][1000 genomes]
rs12417366	0.90[ASN][1000 genomes]
rs12417367	0.90[ASN][1000 genomes]
rs12417981	0.93[ASN][1000 genomes]
rs12418060	0.99[ASN][1000 genomes]
rs12418330	0.90[ASN][1000 genomes]
rs12418450	0.90[ASN][1000 genomes]
rs12418561	0.90[ASN][1000 genomes]
rs12418769	0.90[ASN][1000 genomes]
rs12419150	0.96[ASN][1000 genomes]
rs12419214	0.96[ASN][1000 genomes]
rs12419257	0.90[ASN][1000 genomes]
rs12420084	0.89[ASN][1000 genomes]
rs12420453	0.86[ASN][1000 genomes]
rs12420466	0.82[ASN][1000 genomes]
rs12420698	0.90[ASN][1000 genomes]
rs12420922	0.96[ASN][1000 genomes]
rs12421386	0.88[ASN][1000 genomes]
rs12421655	0.97[ASN][1000 genomes]
rs12422140	0.90[ASN][1000 genomes]
rs17095808	0.96[ASN][1000 genomes]
rs17095820	0.95[ASN][1000 genomes]
rs17095829	0.90[ASN][1000 genomes]
rs1893683	0.96[ASN][1000 genomes]
rs1940221	1.00[ASN][1000 genomes]
rs1941372	0.80[AFR][1000 genomes]
rs1943499	0.97[ASN][1000 genomes]
rs1943500	0.96[ASN][1000 genomes]
rs1944432	0.88[ASN][1000 genomes]
rs1944433	0.91[ASN][1000 genomes]
rs1944434	0.91[ASN][1000 genomes]
rs2155442	0.80[AFR][1000 genomes]
rs2155444	0.90[ASN][1000 genomes]
rs2155445	0.90[ASN][1000 genomes]
rs2165664	0.95[ASN][1000 genomes]
rs2165665	0.91[ASN][1000 genomes]
rs2186784	0.95[ASN][1000 genomes]
rs2186785	0.90[ASN][1000 genomes]
rs2186786	0.90[ASN][1000 genomes]
rs2277274	0.86[ASN][1000 genomes]
rs2277275	0.86[ASN][1000 genomes]
rs2407822	0.96[ASN][1000 genomes]
rs2407823	0.96[ASN][1000 genomes]
rs2407825	0.96[ASN][1000 genomes]
rs2510624	0.80[AFR][1000 genomes]
rs28492796	0.96[ASN][1000 genomes]
rs2897779	0.96[ASN][1000 genomes]
rs3017866	0.80[AFR][1000 genomes]
rs3843607	0.98[ASN][1000 genomes]
rs3886266	0.98[ASN][1000 genomes]
rs4587692	0.96[ASN][1000 genomes]
rs473765	0.87[ASN][1000 genomes]
rs4753987	0.80[AFR][1000 genomes]
rs475432	0.90[ASN][1000 genomes]
rs4754708	0.96[ASN][1000 genomes]
rs4754709	0.96[ASN][1000 genomes]
rs477567	0.80[AFR][1000 genomes]
rs479135	0.90[ASN][1000 genomes]
rs480080	0.80[AFR][1000 genomes]
rs480145	0.90[ASN][1000 genomes]
rs481991	0.80[AFR][1000 genomes]
rs483789	0.80[AFR][1000 genomes]
rs485546	0.90[AFR][1000 genomes]
rs488365	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs493079	0.80[AFR][1000 genomes]
rs497234	0.90[ASN][1000 genomes]
rs501797	0.80[AFR][1000 genomes]
rs501831	0.90[ASN][1000 genomes]
rs503455	0.80[AFR][1000 genomes]
rs506242	0.80[AFR][1000 genomes]
rs507858	0.85[ASN][1000 genomes]
rs508850	0.80[AFR][1000 genomes]
rs508950	0.80[AFR][1000 genomes]
rs509013	0.80[AFR][1000 genomes]
rs509166	0.80[AFR][1000 genomes]
rs509676	0.80[AFR][1000 genomes]
rs512176	0.92[AFR][1000 genomes]
rs513057	0.80[AFR][1000 genomes]
rs514101	0.80[AFR][1000 genomes]
rs514403	0.80[AFR][1000 genomes]
rs514957	0.85[AFR][1000 genomes]
rs515868	0.90[ASN][1000 genomes]
rs516873	0.86[ASN][1000 genomes]
rs518675	0.80[AFR][1000 genomes]
rs519235	0.80[AFR][1000 genomes]
rs519594	0.80[AFR][1000 genomes]
rs520539	0.80[AFR][1000 genomes]
rs522337	0.80[AFR][1000 genomes]
rs524416	0.80[AFR][1000 genomes]
rs525129	0.80[AFR][1000 genomes]
rs527433	0.91[ASN][1000 genomes]
rs527689	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs532783	0.80[AFR][1000 genomes]
rs534623	0.80[AFR][1000 genomes]
rs535518	0.80[AFR][1000 genomes]
rs538158	0.80[AFR][1000 genomes]
rs539204	0.80[AFR][1000 genomes]
rs539648	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs540866	0.86[ASN][1000 genomes]
rs540961	0.80[AFR][1000 genomes]
rs541056	0.80[AFR][1000 genomes]
rs543146	0.89[ASN][1000 genomes]
rs544257	0.86[AFR][1000 genomes]
rs544388	0.80[AFR][1000 genomes]
rs549510	0.90[ASN][1000 genomes]
rs551502	0.80[AFR][1000 genomes]
rs552490	0.90[ASN][1000 genomes]
rs554077	0.90[ASN][1000 genomes]
rs555825	0.90[ASN][1000 genomes]
rs55745131	0.96[ASN][1000 genomes]
rs562891	0.80[AFR][1000 genomes]
rs56320976	0.96[ASN][1000 genomes]
rs563460	0.86[ASN][1000 genomes]
rs568618	0.86[ASN][1000 genomes]
rs571904	0.80[AFR][1000 genomes]
rs572838	0.80[AFR][1000 genomes]
rs57502383	0.91[ASN][1000 genomes]
rs575448	0.80[AFR][1000 genomes]
rs576472	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs578102	0.80[AFR][1000 genomes]
rs580773	0.80[AFR][1000 genomes]
rs583415	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs585183	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs594200	0.80[AFR][1000 genomes]
rs595761	0.80[AFR][1000 genomes]
rs601016	0.90[ASN][1000 genomes]
rs60423120	0.86[ASN][1000 genomes]
rs60612076	0.90[ASN][1000 genomes]
rs608920	0.85[AFR][1000 genomes]
rs613667	0.81[AFR][1000 genomes]
rs616164	0.80[AFR][1000 genomes]
rs617898	0.80[AFR][1000 genomes]
rs618155	0.80[AFR][1000 genomes]
rs618907	0.80[AFR][1000 genomes]
rs619066	0.80[AFR][1000 genomes]
rs620790	0.80[AFR][1000 genomes]
rs626529	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs629442	0.86[AFR][1000 genomes]
rs629677	0.86[AFR][1000 genomes]
rs632725	0.80[AFR][1000 genomes]
rs633967	0.80[AFR][1000 genomes]
rs634968	0.90[ASN][1000 genomes]
rs640326	0.95[ASN][1000 genomes]
rs641341	0.96[AFR][1000 genomes]
rs647256	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs649369	0.80[AFR][1000 genomes]
rs649394	0.80[AFR][1000 genomes]
rs657945	1.00[AFR][1000 genomes]
rs658497	0.86[ASN][1000 genomes]
rs6590829	0.86[ASN][1000 genomes]
rs6590830	0.86[ASN][1000 genomes]
rs6590831	0.86[ASN][1000 genomes]
rs6590832	0.83[ASN][1000 genomes]
rs6590833	0.86[ASN][1000 genomes]
rs661973	0.89[ASN][1000 genomes]
rs662173	0.80[AFR][1000 genomes]
rs662453	0.96[ASN][1000 genomes]
rs662530	0.85[AFR][1000 genomes]
rs668513	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs672160	0.92[AFR][1000 genomes]
rs673183	0.96[AFR][1000 genomes]
rs676976	0.80[AFR][1000 genomes]
rs678775	0.80[AFR][1000 genomes]
rs688146	0.85[ASN][1000 genomes]
rs693760	0.80[AFR][1000 genomes]
rs7110858	0.86[ASN][1000 genomes]
rs7114062	0.95[ASN][1000 genomes]
rs7130581	0.86[ASN][1000 genomes]
rs7130586	0.86[ASN][1000 genomes]
rs7933033	0.86[ASN][1000 genomes]
rs7933457	0.80[AFR][1000 genomes]
rs7938783	0.96[AFR][1000 genomes]
rs7950572	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:100758800-100789400	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:100761600-100788800	Weak transcription	Fetal Heart	heart
6	chr11:100762800-100779000	Weak transcription	NH-A	brain
7	chr11:100770400-100789800	Weak transcription	Fetal Stomach	stomach
8	chr11:100771200-100784600	Weak transcription	Fetal Intestine Small	intestine
9	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:100773800-100779000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:100773800-100789600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:100773800-100789800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:100773800-100809800	Weak transcription	Left Ventricle	heart
14	chr11:100774400-100785200	Weak transcription	Liver	Liver
15	chr11:100774600-100779400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:100774800-100812800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:100776000-100794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:100776800-100779600	Weak transcription	Psoas Muscle	Psoas
19	chr11:100776800-100789600	Weak transcription	Gastric	stomach
20	chr11:100777000-100780800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:100777400-100779800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:100777400-100794200	Weak transcription	Rectal Mucosa Donor 29	rectum

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