Variant report

Variant	rs475432
Chromosome Location	chr11:100819762-100819763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100687718..100690615-chr11:100819413..100821469,2	K562	blood:
2	chr11:100817953..100820202-chr11:100996592..100999547,2	MCF-7	breast:

Extended variants
information (count: 210 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:208)

rs_ID	r²[population]
rs10501968	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10791431	0.89[ASN][1000 genomes]
rs10791434	0.91[AFR][1000 genomes]
rs10791435	0.91[AFR][1000 genomes]
rs10791436	0.80[AFR][1000 genomes]
rs10791437	0.91[AFR][1000 genomes]
rs10791438	0.91[AFR][1000 genomes]
rs10791440	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs10895031	0.91[AFR][1000 genomes]
rs11224507	0.85[ASN][1000 genomes]
rs11224508	0.82[ASN][1000 genomes]
rs11224509	0.86[ASN][1000 genomes]
rs11224526	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11224530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11224535	0.91[AFR][1000 genomes]
rs1145434	0.94[ASN][1000 genomes]
rs11534487	0.84[ASN][1000 genomes]
rs12416898	0.95[ASN][1000 genomes]
rs12417055	0.89[ASN][1000 genomes]
rs12417065	0.89[ASN][1000 genomes]
rs12417366	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12417367	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs12417750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12417981	0.93[ASN][1000 genomes]
rs12418060	0.90[ASN][1000 genomes]
rs12418330	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12418450	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12418561	1.00[ASN][1000 genomes]
rs12418769	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12419150	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs12419214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12419257	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12420084	0.99[ASN][1000 genomes]
rs12420453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12420466	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs12420698	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12420922	0.94[ASN][1000 genomes]
rs12421386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12421655	0.89[ASN][1000 genomes]
rs12422140	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17095808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17095820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17095829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1893683	0.88[ASN][1000 genomes]
rs1940221	0.90[ASN][1000 genomes]
rs1941372	0.91[AFR][1000 genomes]
rs1943499	0.89[ASN][1000 genomes]
rs1943500	0.88[ASN][1000 genomes]
rs1944432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1944433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1944434	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2155442	0.91[AFR][1000 genomes]
rs2155444	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2155445	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2165664	0.86[ASN][1000 genomes]
rs2165665	0.83[ASN][1000 genomes]
rs2186784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2186785	0.89[CHB][hapmap];0.87[JPT][hapmap];1.00[ASN][1000 genomes]
rs2186786	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2277274	0.96[ASN][1000 genomes]
rs2277275	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2407822	0.88[ASN][1000 genomes]
rs2407823	0.88[ASN][1000 genomes]
rs2407825	0.88[ASN][1000 genomes]
rs2510624	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs2510625	0.89[AFR][1000 genomes]
rs2510626	0.89[AFR][1000 genomes]
rs28492796	0.94[ASN][1000 genomes]
rs2897779	0.88[ASN][1000 genomes]
rs3017866	0.91[AFR][1000 genomes]
rs3843607	0.90[ASN][1000 genomes]
rs3886266	0.90[ASN][1000 genomes]
rs4587692	0.88[ASN][1000 genomes]
rs473765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs474651	0.87[AFR][1000 genomes]
rs4753987	0.91[AFR][1000 genomes]
rs4754708	0.88[ASN][1000 genomes]
rs4754709	0.88[ASN][1000 genomes]
rs477567	0.91[AFR][1000 genomes]
rs479135	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs480080	0.91[AFR][1000 genomes]
rs480145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481991	0.91[AFR][1000 genomes]
rs483789	0.91[AFR][1000 genomes]
rs485269	0.84[CHB][hapmap]
rs493079	0.91[AFR][1000 genomes]
rs494451	0.89[AFR][1000 genomes]
rs494907	0.87[AFR][1000 genomes]
rs497234	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501797	0.91[AFR][1000 genomes]
rs501831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs503455	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs505405	0.87[AFR][1000 genomes]
rs505458	1.00[CHB][hapmap]
rs506242	0.91[AFR][1000 genomes]
rs507858	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs508850	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs508950	0.91[AFR][1000 genomes]
rs509013	0.91[AFR][1000 genomes]
rs509166	0.91[AFR][1000 genomes]
rs509676	0.91[AFR][1000 genomes]
rs513057	0.91[AFR][1000 genomes]
rs514101	0.91[AFR][1000 genomes]
rs514403	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs515868	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs518675	0.91[AFR][1000 genomes]
rs519235	0.91[AFR][1000 genomes]
rs519594	0.91[AFR][1000 genomes]
rs520539	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs521216	0.85[AFR][1000 genomes]
rs522337	0.91[AFR][1000 genomes]
rs524416	0.91[AFR][1000 genomes]
rs525129	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs527433	0.98[ASN][1000 genomes]
rs527689	0.90[ASN][1000 genomes]
rs532783	0.91[AFR][1000 genomes]
rs533384	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs534623	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs535518	0.91[AFR][1000 genomes]
rs536270	0.89[AFR][1000 genomes]
rs538158	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs539204	0.91[AFR][1000 genomes]
rs539648	0.94[ASN][1000 genomes]
rs540000	0.87[AFR][1000 genomes]
rs540866	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs540961	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs541056	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs543146	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs544257	0.85[AFR][1000 genomes]
rs544388	0.91[AFR][1000 genomes]
rs549510	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551502	0.91[AFR][1000 genomes]
rs552490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs554077	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555825	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55745131	0.94[ASN][1000 genomes]
rs562891	0.91[AFR][1000 genomes]
rs56320976	0.88[ASN][1000 genomes]
rs563460	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs566608	0.87[AFR][1000 genomes]
rs568618	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs571904	0.91[AFR][1000 genomes]
rs572838	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs57502383	0.98[ASN][1000 genomes]
rs575448	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs575734	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs576472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs578102	0.91[AFR][1000 genomes]
rs580773	0.91[AFR][1000 genomes]
rs583415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs583989	0.81[AFR][1000 genomes]
rs594200	0.91[AFR][1000 genomes]
rs594985	0.80[AFR][1000 genomes]
rs595761	0.91[AFR][1000 genomes]
rs601016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60423120	0.96[ASN][1000 genomes]
rs60612076	1.00[ASN][1000 genomes]
rs616164	0.91[AFR][1000 genomes]
rs617898	0.91[AFR][1000 genomes]
rs618017	0.80[YRI][hapmap];0.83[AFR][1000 genomes]
rs618155	0.91[AFR][1000 genomes]
rs618907	0.91[AFR][1000 genomes]
rs619066	0.91[AFR][1000 genomes]
rs620790	0.91[AFR][1000 genomes]
rs621172	0.80[YRI][hapmap];0.87[AFR][1000 genomes]
rs623072	0.90[ASN][1000 genomes]
rs626529	0.95[ASN][1000 genomes]
rs629442	0.85[AFR][1000 genomes]
rs629677	0.85[AFR][1000 genomes]
rs632725	0.91[AFR][1000 genomes]
rs633967	0.91[AFR][1000 genomes]
rs634968	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs637508	0.80[AFR][1000 genomes]
rs640326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs647256	0.90[ASN][1000 genomes]
rs649369	0.91[AFR][1000 genomes]
rs649394	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs650269	0.80[AFR][1000 genomes]
rs652017	0.89[AFR][1000 genomes]
rs652559	0.89[AFR][1000 genomes]
rs658497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6590829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6590830	0.96[ASN][1000 genomes]
rs6590831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6590832	0.93[ASN][1000 genomes]
rs6590833	0.96[ASN][1000 genomes]
rs661973	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs662173	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs662453	0.87[ASN][1000 genomes]
rs663622	0.89[AFR][1000 genomes]
rs668513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs676976	0.80[YRI][hapmap];0.91[AFR][1000 genomes]
rs678351	0.89[AFR][1000 genomes]
rs678775	0.91[AFR][1000 genomes]
rs688146	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs693760	0.91[AFR][1000 genomes]
rs694556	0.87[AFR][1000 genomes]
rs7110858	0.96[ASN][1000 genomes]
rs7114062	0.94[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs7130581	0.96[ASN][1000 genomes]
rs7130586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7929787	0.87[AFR][1000 genomes]
rs7933033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7933457	0.91[AFR][1000 genomes]
rs7950572	0.96[ASN][1000 genomes]
rs7952007	0.85[AFR][1000 genomes]
rs7952634	0.80[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:100785400-100838400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:100798600-100826600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:100798600-100828200	Weak transcription	Gastric	stomach
5	chr11:100798800-100832200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:100800200-100846600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:100800800-100835800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:100801000-100823200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:100801000-100832400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:100801000-100835000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:100801400-100833800	Weak transcription	NH-A	brain
12	chr11:100803000-100822600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:100804000-100826200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:100806600-100837200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:100806800-100832400	Weak transcription	Fetal Intestine Large	intestine
16	chr11:100807800-100844600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:100808000-100831200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:100808000-100832200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:100808000-100846600	Weak transcription	Ovary	ovary
20	chr11:100810000-100852200	Weak transcription	Small Intestine	intestine
21	chr11:100810400-100845000	Weak transcription	Primary B cells from cord blood	blood
22	chr11:100810600-100848400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:100812000-100825000	Weak transcription	Pancreas	Pancrea
24	chr11:100812000-100826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:100812000-100832000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:100812000-100841000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:100813000-100832400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:100813000-100848600	Weak transcription	A549	lung
29	chr11:100813200-100825200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:100813200-100832000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:100813200-100832000	Weak transcription	Adipose Nuclei	Adipose
32	chr11:100813200-100832000	Weak transcription	Fetal Lung	lung
33	chr11:100813200-100838800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:100813200-100841400	Weak transcription	Fetal Stomach	stomach
35	chr11:100813200-100846600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:100813400-100834800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:100813800-100834000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:100814000-100831600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:100814200-100830000	Weak transcription	Fetal Heart	heart
40	chr11:100814200-100835600	Weak transcription	Dnd41	blood
41	chr11:100815200-100819800	Weak transcription	Left Ventricle	heart
42	chr11:100815400-100830200	Weak transcription	Placenta	Placenta
43	chr11:100815400-100832800	Weak transcription	HSMM	muscle
44	chr11:100815800-100830400	Weak transcription	Liver	Liver
45	chr11:100816200-100832000	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:100819000-100820800	Enhancers	HUVEC	blood vessel
47	chr11:100819600-100820200	Strong transcription	HSMMtube	muscle

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