Variant report

Variant	rs583989
Chromosome Location	chr11:100768003-100768004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10791434	0.89[AFR][1000 genomes]
rs10791435	0.89[AFR][1000 genomes]
rs10791437	0.89[AFR][1000 genomes]
rs10791438	0.89[AFR][1000 genomes]
rs10895031	0.89[AFR][1000 genomes]
rs11224535	0.89[AFR][1000 genomes]
rs1217180	0.94[EUR][1000 genomes]
rs1941370	0.81[EUR][1000 genomes]
rs1941371	0.81[EUR][1000 genomes]
rs1941372	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2155442	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2155793	0.81[EUR][1000 genomes]
rs2510624	0.89[AFR][1000 genomes]
rs2510625	0.87[AFR][1000 genomes]
rs2510626	0.87[AFR][1000 genomes]
rs3017866	0.89[AFR][1000 genomes]
rs471180	0.81[EUR][1000 genomes]
rs474651	0.85[AFR][1000 genomes]
rs4753987	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs475432	0.81[AFR][1000 genomes]
rs477567	0.89[AFR][1000 genomes]
rs480080	0.89[AFR][1000 genomes]
rs480145	0.81[AFR][1000 genomes]
rs481991	0.89[AFR][1000 genomes]
rs483789	0.89[AFR][1000 genomes]
rs493079	0.89[AFR][1000 genomes]
rs494451	0.87[AFR][1000 genomes]
rs494907	0.84[AFR][1000 genomes]
rs497234	0.81[AFR][1000 genomes]
rs501797	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs501831	0.81[AFR][1000 genomes]
rs503455	0.89[AFR][1000 genomes]
rs505405	0.84[AFR][1000 genomes]
rs506242	0.89[AFR][1000 genomes]
rs508850	0.89[AFR][1000 genomes]
rs508950	0.89[AFR][1000 genomes]
rs509013	0.89[AFR][1000 genomes]
rs509166	0.89[AFR][1000 genomes]
rs509676	0.89[AFR][1000 genomes]
rs512176	0.82[AFR][1000 genomes]
rs513057	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs514101	0.89[AFR][1000 genomes]
rs514403	0.89[AFR][1000 genomes]
rs518675	0.89[AFR][1000 genomes]
rs519235	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs519594	0.89[AFR][1000 genomes]
rs520403	0.81[EUR][1000 genomes]
rs520539	0.89[AFR][1000 genomes]
rs521216	0.83[AFR][1000 genomes]
rs522337	0.89[AFR][1000 genomes]
rs524416	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs525129	0.89[AFR][1000 genomes]
rs529194	0.81[EUR][1000 genomes]
rs532783	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs534623	0.89[AFR][1000 genomes]
rs535518	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs536270	0.87[AFR][1000 genomes]
rs538158	0.89[AFR][1000 genomes]
rs539204	0.89[AFR][1000 genomes]
rs540000	0.85[AFR][1000 genomes]
rs540961	0.89[AFR][1000 genomes]
rs541056	0.89[AFR][1000 genomes]
rs544257	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs544388	0.89[AFR][1000 genomes]
rs546052	0.81[EUR][1000 genomes]
rs546059	0.94[EUR][1000 genomes]
rs547105	0.81[EUR][1000 genomes]
rs549510	0.81[AFR][1000 genomes]
rs551502	0.89[AFR][1000 genomes]
rs555825	0.81[AFR][1000 genomes]
rs560235	0.81[EUR][1000 genomes]
rs562891	0.89[AFR][1000 genomes]
rs566608	0.85[AFR][1000 genomes]
rs571904	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs572838	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs575448	0.89[AFR][1000 genomes]
rs577170	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs578102	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs580773	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs584029	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs594200	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs595761	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs601016	0.81[AFR][1000 genomes]
rs607889	0.91[EUR][1000 genomes]
rs614393	0.88[EUR][1000 genomes]
rs614761	0.88[EUR][1000 genomes]
rs616164	0.89[AFR][1000 genomes]
rs617898	0.89[AFR][1000 genomes]
rs618017	0.81[AFR][1000 genomes]
rs618155	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs618907	0.89[AFR][1000 genomes]
rs619066	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs620790	0.89[AFR][1000 genomes]
rs621172	0.85[AFR][1000 genomes]
rs629442	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs629677	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs632725	0.89[AFR][1000 genomes]
rs633967	0.89[AFR][1000 genomes]
rs636528	0.88[EUR][1000 genomes]
rs637508	0.81[EUR][1000 genomes]
rs638004	0.81[EUR][1000 genomes]
rs641341	0.82[AFR][1000 genomes]
rs641948	0.91[EUR][1000 genomes]
rs649369	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs649394	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs650269	0.81[EUR][1000 genomes]
rs652017	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs652559	0.87[AFR][1000 genomes]
rs662173	0.89[AFR][1000 genomes]
rs663622	0.87[AFR][1000 genomes]
rs673183	0.82[AFR][1000 genomes]
rs676976	0.89[AFR][1000 genomes]
rs678351	0.87[AFR][1000 genomes]
rs678775	0.89[AFR][1000 genomes]
rs688664	0.91[EUR][1000 genomes]
rs693760	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs694556	0.85[AFR][1000 genomes]
rs7929787	0.85[AFR][1000 genomes]
rs7933457	0.89[AFR][1000 genomes]
rs7938783	0.82[AFR][1000 genomes]
rs7952007	0.83[AFR][1000 genomes]
rs7952634	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100758600-100773400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:100758800-100789400	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:100761000-100773400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:100761600-100777400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:100761600-100788800	Weak transcription	Fetal Heart	heart
9	chr11:100761800-100773400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:100762800-100779000	Weak transcription	NH-A	brain

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