Variant report

Variant	rs2159019
Chromosome Location	chr7:14370082-14370083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1012221	1.00[LWK][hapmap];0.89[MKK][hapmap]
rs10950516	1.00[MKK][hapmap]
rs10950518	0.82[MKK][hapmap]
rs17150056	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2215035	1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap]
rs4141257	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4141259	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4385371	0.82[MKK][hapmap]
rs4463321	1.00[LWK][hapmap];0.82[MEX][hapmap];0.89[MKK][hapmap]
rs6415237	0.91[MEX][hapmap];0.89[MKK][hapmap]
rs6961153	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs7785249	1.00[LWK][hapmap];0.82[MEX][hapmap];0.89[MKK][hapmap]
rs7799368	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap]
rs917324	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2159019	AGR3	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14366800-14371800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:14368800-14371800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:14368800-14375600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:14368800-14379000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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