Variant report

Variant	rs10950518
Chromosome Location	chr7:14326124-14326125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14324239..14326244-chr7:14344678..14347270,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1012221	0.86[CHB][hapmap];0.92[JPT][hapmap];0.93[MKK][hapmap]
rs10228492	0.92[EUR][1000 genomes]
rs10239380	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10950516	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10950517	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2108514	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs2108515	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2159019	0.82[MKK][hapmap]
rs2159020	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2215035	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap]
rs2215037	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4385371	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap]
rs4404823	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4463321	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4719398	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4721319	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6415237	0.84[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.93[MKK][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6461083	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6945418	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955155	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6960014	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6961153	0.82[JPT][hapmap]
rs6962476	0.84[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7785249	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7793052	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs7796825	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs969689	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs979720	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14325600-14327200	Weak transcription	Fetal Heart	heart

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