Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10239380	0.92[EUR][1000 genomes]
rs10257651	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10950516	0.88[EUR][1000 genomes]
rs10950517	0.95[EUR][1000 genomes]
rs10950518	0.92[EUR][1000 genomes]
rs11974509	0.91[AFR][1000 genomes]
rs2108514	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2108515	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2159020	0.93[EUR][1000 genomes]
rs2190672	0.94[AFR][1000 genomes]
rs2215037	0.95[EUR][1000 genomes]
rs4404823	0.80[EUR][1000 genomes]
rs4463321	0.93[EUR][1000 genomes]
rs4721319	0.96[EUR][1000 genomes]
rs55776849	0.95[AFR][1000 genomes]
rs55816754	0.91[AFR][1000 genomes]
rs57360595	0.94[AFR][1000 genomes]
rs6461083	0.90[EUR][1000 genomes]
rs6945418	0.91[EUR][1000 genomes]
rs6970467	0.84[AFR][1000 genomes]
rs7785249	0.92[EUR][1000 genomes]
rs7793052	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7796825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs979720	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14318400-14319200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:14318400-14319200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr7:14318400-14319200	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr7:14318400-14319200	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr7:14318400-14319200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:14318400-14319400	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr7:14318600-14319200	Active TSS	Fetal Intestine Large	intestine
8	chr7:14318600-14319400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:14318800-14319200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:14319000-14319400	Enhancers	H1 Cell Line	embryonic stem cell

Quick Search: