Variant report

Variant	rs2159020
Chromosome Location	chr7:14316193-14316194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1012221	0.92[JPT][hapmap]
rs10228492	0.93[EUR][1000 genomes]
rs10239380	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10950516	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10950517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10950518	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2108514	0.85[CEU][hapmap];0.96[EUR][1000 genomes]
rs2108515	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs2215035	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2215037	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4385371	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4404823	0.83[EUR][1000 genomes]
rs4463321	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4719398	1.00[CEU][hapmap]
rs4721319	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6415237	0.91[CEU][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs6461083	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6945418	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6955155	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6960014	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6961153	0.82[JPT][hapmap]
rs6962476	0.91[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7785249	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7793052	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs7796825	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs969689	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs979720	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14311600-14316800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:14311600-14318200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:14315800-14317000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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