Variant report
| Variant | rs6961153 |
|---|---|
| Chromosome Location | chr7:14364861-14364862 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:14363416..14366270-chr7:14373533..14375322,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1012221 | 0.83[JPT][hapmap] |
| rs10239380 | 0.83[JPT][hapmap] |
| rs10950516 | 0.83[JPT][hapmap] |
| rs10950517 | 0.83[JPT][hapmap] |
| rs10950518 | 0.82[JPT][hapmap] |
| rs17150056 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2159019 | 1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2159020 | 0.82[JPT][hapmap] |
| rs2215035 | 0.83[JPT][hapmap] |
| rs4141257 | 1.00[CEU][hapmap];0.92[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4141259 | 1.00[CEU][hapmap];0.92[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4385371 | 0.83[JPT][hapmap] |
| rs4463321 | 0.83[JPT][hapmap] |
| rs4721319 | 0.83[JPT][hapmap] |
| rs6415237 | 0.83[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs6461083 | 0.82[JPT][hapmap] |
| rs6955155 | 0.84[CHB][hapmap];0.83[JPT][hapmap] |
| rs6960014 | 0.83[JPT][hapmap] |
| rs6962476 | 0.83[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs7785249 | 0.83[JPT][hapmap] |
| rs7799368 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs917324 | 1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs969689 | 0.83[JPT][hapmap] |
| rs979720 | 0.92[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv3388174 | chr7:14348761-14369819 | Weak transcription Active TSS Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
