Variant report

Variant	rs6962476
Chromosome Location	chr7:14359982-14359983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1012221	1.00[JPT][hapmap]
rs10239380	0.84[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10950516	0.84[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs10950517	0.84[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10950518	0.84[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2159020	0.91[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2215035	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2215037	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4385371	0.84[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap]
rs4404823	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4463321	0.84[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4719398	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4721319	0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6415237	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6461083	0.83[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6945418	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6955155	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6960014	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6961153	0.83[JPT][hapmap]
rs7785249	0.84[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7799368	0.84[JPT][hapmap]
rs917324	0.80[AMR][1000 genomes]
rs969689	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs979720	0.84[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3388174	chr7:14348761-14369819	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14358400-14361800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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