Variant report

Variant	rs4404823
Chromosome Location	chr7:14358653-14358654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10228492	0.80[EUR][1000 genomes]
rs10239380	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10950517	0.83[EUR][1000 genomes]
rs10950518	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2159020	0.83[EUR][1000 genomes]
rs2215037	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4463321	0.86[EUR][1000 genomes]
rs4721319	0.84[EUR][1000 genomes]
rs6415237	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6461083	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6945418	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6962476	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7785249	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7793052	0.80[EUR][1000 genomes]
rs7796825	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3388174	chr7:14348761-14369819	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14358400-14361800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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