Variant report

Variant	rs2108514
Chromosome Location	chr7:14316093-14316094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10228492	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10239380	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs10257651	0.83[AMR][1000 genomes]
rs10950516	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs10950517	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs10950518	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs11974509	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs2108515	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159020	0.85[CEU][hapmap];0.96[EUR][1000 genomes]
rs2190672	0.90[AFR][1000 genomes]
rs2215035	0.85[CEU][hapmap]
rs2215037	0.94[EUR][1000 genomes]
rs4385371	0.85[CEU][hapmap]
rs4463321	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs4483055	0.89[YRI][hapmap]
rs4719398	0.85[CEU][hapmap]
rs4721319	0.95[EUR][1000 genomes]
rs55776849	0.87[AFR][1000 genomes]
rs55816754	0.84[AFR][1000 genomes]
rs57360595	0.87[AFR][1000 genomes]
rs6461083	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs6945418	0.90[EUR][1000 genomes]
rs6955155	0.85[CEU][hapmap]
rs6960014	0.85[CEU][hapmap]
rs7785249	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs7793052	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7796825	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs969689	0.92[CEU][hapmap]
rs979720	0.85[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14311600-14316800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:14311600-14318200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:14315800-14317000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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