Variant report

Variant	rs55816754
Chromosome Location	chr7:14318509-14318510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10228492	0.91[AFR][1000 genomes]
rs10257651	0.82[AFR][1000 genomes]
rs11974509	0.89[AFR][1000 genomes]
rs2108514	0.84[AFR][1000 genomes]
rs2108515	0.87[AFR][1000 genomes]
rs2190672	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28831979	0.89[ASN][1000 genomes]
rs55776849	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56216249	0.87[AMR][1000 genomes]
rs57360595	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60170162	0.87[AMR][1000 genomes]
rs62443668	0.85[ASN][1000 genomes]
rs6969982	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6970467	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7793052	0.88[AFR][1000 genomes]
rs7796825	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14318200-14318600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:14318200-14319000	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:14318400-14319000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr7:14318400-14319000	Active TSS	H1 Cell Line	embryonic stem cell
5	chr7:14318400-14319000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr7:14318400-14319000	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr7:14318400-14319000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:14318400-14319000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:14318400-14319200	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr7:14318400-14319200	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr7:14318400-14319200	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr7:14318400-14319200	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:14318400-14319200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:14318400-14319400	Active TSS	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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