Variant report

Variant	rs62443668
Chromosome Location	chr7:14318275-14318276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17168038	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17168042	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2190672	0.88[ASN][1000 genomes]
rs28831979	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55776849	0.93[ASN][1000 genomes]
rs55816754	0.85[ASN][1000 genomes]
rs56752869	1.00[EUR][1000 genomes]
rs57360595	0.93[ASN][1000 genomes]
rs62443666	1.00[EUR][1000 genomes]
rs62443673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62443703	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6969982	0.89[ASN][1000 genomes]
rs6970467	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14318000-14318400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:14318000-14318400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:14318200-14318400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:14318200-14318400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:14318200-14318400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:14318200-14318600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:14318200-14319000	Active TSS	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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