Variant report

Variant	rs28831979
Chromosome Location	chr7:14319026-14319027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17168038	0.84[ASN][1000 genomes]
rs2190672	0.91[ASN][1000 genomes]
rs55776849	0.96[ASN][1000 genomes]
rs55816754	0.89[ASN][1000 genomes]
rs57360595	0.96[ASN][1000 genomes]
rs62443666	0.88[ASN][1000 genomes]
rs62443668	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62443673	0.83[AMR][1000 genomes]
rs6969982	1.00[ASN][1000 genomes]
rs6970467	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14318400-14319200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:14318400-14319200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr7:14318400-14319200	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr7:14318400-14319200	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr7:14318400-14319200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:14318400-14319400	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr7:14318600-14319200	Active TSS	Fetal Intestine Large	intestine
8	chr7:14318600-14319400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:14318800-14319200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:14319000-14319400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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