Variant report

Variant	rs6970467
Chromosome Location	chr7:14319247-14319248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10228492	0.84[AFR][1000 genomes]
rs11974509	0.82[AFR][1000 genomes]
rs17168038	0.85[ASN][1000 genomes]
rs2108515	0.81[AFR][1000 genomes]
rs2190672	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28831979	0.95[ASN][1000 genomes]
rs55776849	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs55816754	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57360595	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60170162	0.93[AMR][1000 genomes]
rs62443666	0.83[ASN][1000 genomes]
rs62443668	0.91[ASN][1000 genomes]
rs6969982	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7793052	0.82[AFR][1000 genomes]
rs7796825	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14318400-14319400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr7:14318600-14319400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:14319000-14319400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:14319200-14319400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr7:14319200-14319400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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