Variant report

Variant	rs62443666
Chromosome Location	chr7:14314165-14314166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17168038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17168042	1.00[EUR][1000 genomes]
rs2190672	0.87[ASN][1000 genomes]
rs28831979	0.88[ASN][1000 genomes]
rs55776849	0.85[ASN][1000 genomes]
rs56752869	1.00[EUR][1000 genomes]
rs57360595	0.85[ASN][1000 genomes]
rs62443668	1.00[EUR][1000 genomes]
rs62443673	1.00[EUR][1000 genomes]
rs62443703	1.00[EUR][1000 genomes]
rs6969982	0.88[ASN][1000 genomes]
rs6970467	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14311600-14316800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:14311600-14318200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:14312000-14314400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:14313800-14314400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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