Variant report

Variant	rs2159542
Chromosome Location	chr17:63358195-63358196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55787621	0.81[ASN][1000 genomes]
rs55865571	0.94[EUR][1000 genomes]
rs60714481	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60799111	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62064355	0.94[EUR][1000 genomes]
rs62064358	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62065560	1.00[EUR][1000 genomes]
rs62065561	1.00[EUR][1000 genomes]
rs62065562	1.00[EUR][1000 genomes]
rs62065563	1.00[EUR][1000 genomes]
rs62065567	1.00[EUR][1000 genomes]
rs62065569	1.00[EUR][1000 genomes]
rs62065570	1.00[EUR][1000 genomes]
rs62065586	0.88[EUR][1000 genomes]
rs6504300	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7221306	1.00[EUR][1000 genomes]
rs7225626	0.97[ASN][1000 genomes]
rs7225880	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv575873	chr17:63323581-63371880	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63354800-63359000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr17:63355400-63360800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:63355600-63358200	Weak transcription	NHLF	lung
4	chr17:63356200-63362200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:63357800-63358200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr17:63357800-63358800	Weak transcription	Psoas Muscle	Psoas
7	chr17:63357800-63361800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr17:63357800-63362000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr17:63358000-63362000	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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