Variant report

Variant	rs55865571
Chromosome Location	chr17:63353903-63353904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2159542	0.94[EUR][1000 genomes]
rs60714481	0.94[EUR][1000 genomes]
rs60799111	0.94[EUR][1000 genomes]
rs62064355	1.00[EUR][1000 genomes]
rs62064358	0.94[EUR][1000 genomes]
rs62065560	0.94[EUR][1000 genomes]
rs62065561	0.94[EUR][1000 genomes]
rs62065562	0.94[EUR][1000 genomes]
rs62065563	0.94[EUR][1000 genomes]
rs62065567	0.94[EUR][1000 genomes]
rs62065569	0.94[EUR][1000 genomes]
rs62065570	0.94[EUR][1000 genomes]
rs62065586	0.82[EUR][1000 genomes]
rs6504300	0.94[EUR][1000 genomes]
rs7221306	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv575873	chr17:63323581-63371880	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63351800-63354600	Weak transcription	Osteobl	bone
2	chr17:63353000-63354600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:63353000-63354600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links