Variant report

Variant	rs2160072
Chromosome Location	chr2:20576579-20576580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10190763	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11096655	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs2110409	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2348704	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs343163	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs343164	0.88[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs343165	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3771228	0.83[CEU][hapmap]
rs4666304	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4666305	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4666382	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4666383	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6531232	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6713329	0.82[EUR][1000 genomes]
rs6754782	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6756819	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7355288	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2160072	WDR35	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20565200-20578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20570200-20578600	Weak transcription	Ovary	ovary
3	chr2:20571800-20576600	Weak transcription	Fetal Lung	lung
4	chr2:20572800-20578400	Weak transcription	Fetal Brain Male	brain
5	chr2:20575000-20578600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:20575200-20576800	Weak transcription	Aorta	Aorta
7	chr2:20575200-20578600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:20575400-20578200	Weak transcription	Placenta	Placenta
9	chr2:20575400-20581000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr2:20576200-20578400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:20576400-20578000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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