Variant report

Variant	rs6756819
Chromosome Location	chr2:20571673-20571674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20564625..20568805-chr2:20571129..20576493,6	MCF-7	breast:
2	chr2:20571196..20572728-chr2:20579213..20580832,2	MCF-7	breast:
3	chr2:20570098..20572702-chr2:20619357..20621600,2	MCF-7	breast:
4	chr2:20569349..20572195-chr2:20573816..20575777,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10190763	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11096655	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11679966	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11683916	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11686919	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2110409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2160072	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2348704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs343163	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs343164	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs343165	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3771228	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs4666299	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4666304	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4666305	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4666382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4666383	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6713329	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6754782	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7355288	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7596797	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20565200-20578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20565800-20575200	Weak transcription	NH-A	brain
3	chr2:20569000-20571800	Enhancers	NHEK	skin
4	chr2:20569600-20574200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:20570200-20574800	Weak transcription	Placenta	Placenta
6	chr2:20570200-20578600	Weak transcription	Ovary	ovary
7	chr2:20570800-20571800	Weak transcription	Fetal Brain Male	brain
8	chr2:20571000-20571800	Enhancers	Fetal Stomach	stomach
9	chr2:20571200-20571800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:20571200-20571800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:20571200-20571800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:20571200-20571800	Flanking Active TSS	Fetal Brain Female	brain
13	chr2:20571200-20571800	Enhancers	Fetal Muscle Leg	muscle
14	chr2:20571400-20571800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:20571600-20571800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:20571600-20571800	Flanking Active TSS	Fetal Lung	lung
17	chr2:20571600-20572200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr2:20571600-20575000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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