Variant report

Variant	rs4666382
Chromosome Location	chr2:20558421-20558422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20550827..20554481-chr2:20557556..20561115,3	K562	blood:
2	chr2:20546366..20548868-chr2:20557899..20560601,2	K562	blood:
3	chr2:20558156..20560434-chr2:20578945..20580721,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252216	Chromatin interaction
ENSG00000055917	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10190763	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11096655	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11679966	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11683916	0.91[EUR][1000 genomes]
rs11686919	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2110409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.92[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2160072	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2348704	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs343163	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs343164	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs343165	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3771228	0.95[CEU][hapmap];0.82[CHB][hapmap]
rs4666299	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4666304	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4666305	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4666383	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6531232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6713329	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6754782	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6756819	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7355288	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7596797	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4666382	HS1BP3	cis	parietal	SCAN
rs4666382	WDR35	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20551600-20568800	Weak transcription	Psoas Muscle	Psoas
2	chr2:20552200-20562600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr2:20552200-20565000	Weak transcription	Esophagus	oesophagus
4	chr2:20552400-20558800	Weak transcription	Stomach Mucosa	stomach
5	chr2:20553600-20565000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:20554200-20562600	Weak transcription	Placenta	Placenta
7	chr2:20556600-20561400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:20556600-20563400	Weak transcription	GM12878-XiMat	blood
9	chr2:20556600-20564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:20556600-20565000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:20556800-20561200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:20556800-20561800	Weak transcription	HMEC	breast
13	chr2:20556800-20569200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:20557000-20561800	Weak transcription	NHEK	skin
15	chr2:20557800-20560000	Weak transcription	NHDF-Ad	bronchial
16	chr2:20558000-20560200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr2:20558200-20560000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:20558200-20560400	Weak transcription	Monocytes-CD14+_RO01746	blood

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