Variant report

Variant	rs2170552
Chromosome Location	chr4:111168292-111168293
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12499996	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12508536	0.85[EUR][1000 genomes]
rs13143689	0.89[EUR][1000 genomes]
rs17041496	0.85[EUR][1000 genomes]
rs34163192	0.88[EUR][1000 genomes]
rs34304604	0.91[EUR][1000 genomes]
rs34605697	0.85[EUR][1000 genomes]
rs4541589	0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs4557340	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4585374	0.91[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs4698764	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4698817	0.85[EUR][1000 genomes]
rs6533501	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs6533503	0.91[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs6533505	0.91[EUR][1000 genomes]
rs7682889	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7697518	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2170552	OSTC	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111167000-111170800	Weak transcription	Osteobl	bone
2	chr4:111167200-111169400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:111167400-111170600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:111167400-111171200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:111168200-111169400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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