Variant report
| Variant | rs7682889 |
|---|---|
| Chromosome Location | chr4:111187919-111187920 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000170522 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs12499996 | 0.82[EUR][1000 genomes] |
| rs12508536 | 0.85[EUR][1000 genomes] |
| rs17041496 | 0.85[EUR][1000 genomes] |
| rs2170552 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs34304604 | 0.83[EUR][1000 genomes] |
| rs34605697 | 0.85[EUR][1000 genomes] |
| rs4541589 | 0.85[EUR][1000 genomes] |
| rs4557340 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4585374 | 0.85[EUR][1000 genomes] |
| rs4698764 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4698817 | 0.86[EUR][1000 genomes] |
| rs6533501 | 0.85[EUR][1000 genomes] |
| rs6533503 | 0.85[EUR][1000 genomes] |
| rs6533505 | 0.83[EUR][1000 genomes] |
| rs7697518 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869392 | chr4:110945459-111235071 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
