Variant report

Variant	rs4698764
Chromosome Location	chr4:111146784-111146785
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12499996	0.89[EUR][1000 genomes]
rs12508536	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13143689	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17041496	0.87[EUR][1000 genomes]
rs2170552	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34163192	0.87[EUR][1000 genomes]
rs34304604	0.90[EUR][1000 genomes]
rs34605697	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4541589	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4557340	1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4585374	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs4698817	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6533501	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs6533503	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6533505	0.90[EUR][1000 genomes]
rs7682889	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7697518	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4698764	NPAS1	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111141400-111148800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:111146400-111147000	Enhancers	K562	blood
3	chr4:111146400-111151000	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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