Variant report

Variant	rs2173876
Chromosome Location	chr15:72003131-72003132
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:71999665..72001302-chr15:72002651..72004963,2	MCF-7	breast:
2	chr15:72001882..72004088-chr15:72004947..72006586,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1354103	1.00[AMR][1000 genomes]
rs1604336	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs2415117	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58076092	1.00[AMR][1000 genomes]
rs58231877	1.00[AMR][1000 genomes]
rs58413354	1.00[AMR][1000 genomes]
rs59853097	1.00[AMR][1000 genomes]
rs60359363	1.00[AMR][1000 genomes]
rs7170285	1.00[AMR][1000 genomes]
rs73443854	1.00[AMR][1000 genomes]
rs74022160	1.00[AMR][1000 genomes]
rs8042924	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71998000-72009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:71998000-72009200	Weak transcription	NHEK	skin
3	chr15:71998600-72003200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:72000200-72005000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:72000800-72023400	Weak transcription	Fetal Intestine Small	intestine
6	chr15:72001400-72003200	Enhancers	Hela-S3	cervix
7	chr15:72001400-72005600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:72001400-72005600	Weak transcription	Pancreas	Pancrea
9	chr15:72001400-72009000	Weak transcription	Lung	lung
10	chr15:72001400-72009400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:72002000-72004200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:72002000-72008200	Weak transcription	Adipose Nuclei	Adipose
13	chr15:72002200-72003200	Enhancers	Aorta	Aorta
14	chr15:72002400-72008800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:72002400-72022600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:72002600-72003200	Enhancers	Liver	Liver
17	chr15:72002600-72005400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:72002600-72008800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:72002600-72022600	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:72002800-72003200	Enhancers	Gastric	stomach
21	chr15:72002800-72003200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr15:72003000-72003200	Enhancers	Ovary	ovary
23	chr15:72003000-72004000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:72003000-72008400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:72003000-72008400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:72003000-72008400	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links