Variant report

Variant	rs59853097
Chromosome Location	chr15:72033957-72033958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72033554..72035831-chr15:72037556..72039339,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1354103	1.00[AMR][1000 genomes]
rs1604336	1.00[AMR][1000 genomes]
rs2173876	1.00[AMR][1000 genomes]
rs2415117	1.00[AMR][1000 genomes]
rs58076092	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58231877	1.00[AMR][1000 genomes]
rs58413354	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60359363	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7170285	1.00[AMR][1000 genomes]
rs8042924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv904335	chr15:72018469-72064719	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72017000-72048800	Weak transcription	Placenta	Placenta
2	chr15:72020200-72039000	Weak transcription	Pancreas	Pancrea
3	chr15:72021600-72071400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:72024600-72045600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:72025400-72039200	Weak transcription	Gastric	stomach
6	chr15:72025600-72035200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:72026000-72039200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:72027600-72040600	Weak transcription	Aorta	Aorta
9	chr15:72028400-72036600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:72029000-72035400	Weak transcription	Liver	Liver
11	chr15:72029400-72036200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:72030000-72034600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:72030000-72035000	Strong transcription	Fetal Stomach	stomach
14	chr15:72030200-72039800	Weak transcription	Fetal Kidney	kidney
15	chr15:72030400-72037600	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:72030400-72075800	Weak transcription	Right Ventricle	heart
17	chr15:72030800-72036800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:72031000-72037600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:72031000-72039000	Weak transcription	Lung	lung
20	chr15:72031200-72039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:72031200-72048200	Weak transcription	Left Ventricle	heart
22	chr15:72031400-72035000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:72031600-72036000	Weak transcription	Fetal Intestine Small	intestine
24	chr15:72031800-72039200	Weak transcription	HMEC	breast
25	chr15:72032000-72036000	Weak transcription	Fetal Heart	heart
26	chr15:72032200-72039400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:72032400-72035400	Weak transcription	A549	lung
28	chr15:72032600-72035400	Weak transcription	Fetal Intestine Large	intestine
29	chr15:72032800-72034600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:72032800-72034800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:72032800-72035000	Strong transcription	Esophagus	oesophagus
32	chr15:72032800-72035000	Strong transcription	NHEK	skin
33	chr15:72033000-72034600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:72033000-72034800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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