Variant report

Variant	rs8042924
Chromosome Location	chr15:72008679-72008680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1354103	1.00[AMR][1000 genomes]
rs1604336	1.00[AMR][1000 genomes]
rs2173876	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2415117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58076092	1.00[AMR][1000 genomes]
rs58231877	1.00[AMR][1000 genomes]
rs58413354	1.00[AMR][1000 genomes]
rs59853097	1.00[AMR][1000 genomes]
rs60359363	1.00[AMR][1000 genomes]
rs7170285	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73443854	1.00[AMR][1000 genomes]
rs74022160	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71998000-72009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:71998000-72009200	Weak transcription	NHEK	skin
3	chr15:72000800-72023400	Weak transcription	Fetal Intestine Small	intestine
4	chr15:72001400-72009000	Weak transcription	Lung	lung
5	chr15:72001400-72009400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:72002400-72008800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:72002400-72022600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:72002600-72008800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:72002600-72022600	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:72003200-72018000	Weak transcription	Ovary	ovary
11	chr15:72005800-72009400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:72005800-72024600	Weak transcription	Left Ventricle	heart
13	chr15:72008200-72009400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:72008200-72009400	Enhancers	Adipose Nuclei	Adipose
15	chr15:72008400-72009800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:72008400-72009800	Enhancers	HMEC	breast
17	chr15:72008400-72010000	Enhancers	NHLF	lung
18	chr15:72008400-72010200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:72008400-72010200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:72008600-72010000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:72008600-72010000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:72008600-72010800	Enhancers	Hela-S3	cervix

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