Variant report

Variant	rs2176507
Chromosome Location	chr1:223594234-223594235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12040106	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12044202	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1619227	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs17162072	0.85[TSI][hapmap]
rs17163831	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs7555607	0.83[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv4687	chr1:223565080-223610362	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2176507	SUSD4	cis	cerebellum	SCAN
rs2176507	SUSD4	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223591200-223595200	Enhancers	Pancreas	Pancrea
2	chr1:223592400-223596000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:223592600-223594600	Weak transcription	Right Atrium	heart
4	chr1:223592600-223594800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:223592600-223595200	Enhancers	Fetal Heart	heart
6	chr1:223592600-223597400	Weak transcription	Right Ventricle	heart
7	chr1:223592800-223594600	Weak transcription	Ovary	ovary
8	chr1:223593200-223594400	Weak transcription	Left Ventricle	heart
9	chr1:223593600-223594800	Enhancers	Fetal Brain Female	brain
10	chr1:223593600-223595200	Enhancers	Gastric	stomach
11	chr1:223594200-223595000	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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