Variant report

Variant	rs7555607
Chromosome Location	chr1:223547630-223547631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223536038..223539069-chr1:223546089..223550790,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143502	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10495207	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs10907376	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs11261264	0.90[EUR][1000 genomes]
rs11261270	0.81[EUR][1000 genomes]
rs12123148	0.89[EUR][1000 genomes]
rs12140453	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs12564615	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs1547788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1619227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1713219	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1713220	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17162008	0.86[EUR][1000 genomes]
rs17163824	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17163825	0.91[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17163828	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17163831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17578203	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs1772280	0.89[EUR][1000 genomes]
rs1772284	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2138966	0.80[EUR][1000 genomes]
rs2176507	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs2459849	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2487521	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2678377	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34150324	0.89[EUR][1000 genomes]
rs35318812	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59355120	0.81[EUR][1000 genomes]
rs61838234	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61838235	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61838236	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61838237	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61838241	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61838246	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61838249	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61838250	0.80[EUR][1000 genomes]
rs61838252	0.86[EUR][1000 genomes]
rs61839867	0.89[EUR][1000 genomes]
rs61839876	0.81[EUR][1000 genomes]
rs61839877	0.81[EUR][1000 genomes]
rs61839878	0.81[EUR][1000 genomes]
rs61839879	0.81[EUR][1000 genomes]
rs6604709	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536652	0.90[CEU][hapmap];0.94[CHB][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7541162	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs870486	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9442046	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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